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• Array File Maker 4.0 (AFM 4.0)
• BioGRID - Biology General Repository of Interaction Data
• BioGRID Webgraph
• ChemGRID Chemistry General Repository of Interaction Data
• IoRN Inference of Regulatory Networks
• Osprey
• Prohits
• SGA analyse - statistics for SGA screens


Osprey

We developed a Java program for visualization and manipulation of complex interaction networks. Osprey builds data-rich graphical representations that are color-coded for gene function and experimental interaction data. A permanent database connection to Biogrid allows the user to manage curated and high througput interactions of favorite genes. Several layout algorithms support the rapid elaboration and organization of network diagrams. Access to download >>

Recommended literature:
Breitkreutz et al.Osprey: a network visualization system.
Suderman et al. Tools for visually exploring biological networks.
Shannon et al.Cytoscape: A Software Environment for Integrated Models of Biomolecular Interaction Networks.


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